Sergushichev Lab

Major publications

2025

CORESH: a gene signature-based search engine for public gene expression datasets
CORESH: a gene signature-based search engine for public gene expression datasets
Vladimir Sukhov, Aigul Nugmanova, Yury Vorontsov, Parul Mehrotra, Maksim Kleverov, Kodi Ravichandran, Maxim Artyomov, Alexey Sergushichev
Nucleic Acids Research  ·  05 May 2025  ·  10.1093/nar/gkaf372

2024

Phantasus, a web application for visual and interactive gene expression analysis
Phantasus, a web application for visual and interactive gene expression analysis
Maksim Kleverov, Daria Zenkova, Vladislav Kamenev, Margarita Sablina, Maxim N Artyomov, Alexey A Sergushichev
eLife  ·  03 Jun 2024  ·  10.7554/eLife.85722

2023

Network analysis of large-scale ImmGen and Tabula Muris datasets highlights metabolic diversity of tissue mononuclear phagocytes
Network analysis of large-scale ImmGen and Tabula Muris datasets highlights metabolic diversity of tissue mononuclear phagocytes
Anastasiia Gainullina, Denis A. Mogilenko, Li-Hao Huang, Helena Todorov, Vipin Narang, …, Christophe Benoist, Miriam Merad, Gwendalyn J. Randolph, Alexey Sergushichev, Maxim N. Artyomov
Cell Reports  ·  01 Feb 2023  ·  10.1016/j.celrep.2023.112046

2022

Shiny GATOM: omics-based identification of regulated metabolic modules in atom transition networks
Shiny GATOM: omics-based identification of regulated metabolic modules in atom transition networks
Mariia Emelianova, Anastasiia Gainullina, Nikolay Poperechnyi, Alexander Loboda, Maxim Artyomov, Alexey Sergushichev
Nucleic Acids Research  ·  27 May 2022  ·  doi:10.1093/nar/gkac427

2021

Fast gene set enrichment analysis
Fast gene set enrichment analysis
Gennady Korotkevich, Vladimir Sukhov, Nikolay Budin, Boris Shpak, Maxim N. Artyomov, Alexey Sergushichev
Cold Spring Harbor Laboratory  ·  01 Feb 2021  ·  10.1101/060012

2020

Markov chain Monte Carlo for active module identification problem
Markov chain Monte Carlo for active module identification problem
Nikita Alexeev, Javlon Isomurodov, Vladimir Sukhov, Gennady Korotkevich, Alexey Sergushichev
BMC Bioinformatics  ·  01 Nov 2020  ·  10.1186/s12859-020-03572-9

2016

Solving Generalized Maximum-Weight Connected Subgraph Problem for Network Enrichment Analysis
Solving Generalized Maximum-Weight Connected Subgraph Problem for Network Enrichment Analysis
Alexander A. Loboda, Maxim N. Artyomov, Alexey A. Sergushichev
Lecture Notes in Computer Science  ·  01 Jan 2016  ·  10.1007/978-3-319-43681-4_17